Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA11296804
[wgsExptID] => 23
[Batch] => CRUKCI_1
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina DNA Prep
[PcrFree] => N
[SampleCount] => 23
[DateSubmitted] => 2021-06-11
[FastqID] => 632
[wgsID] => 9
[fwdFile] => CHC_35692_R1.fastq.gz
[fwdMd5] => e33c9c8a851629fafb32336b55218dca
[revFile] => CHC_35692_R2.fastq.gz
[revMd5] => 421287ba7d6b3cbeb2c703a5b6764820
[rawReads] => 1008412040
[FastqRCS] => 1
[enaExperiment] => ERX10830377
[enaRun] => ERR11423069
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 26
[wgsID] => 9
[refGenome] => cf4
[dateSubmitted] => 2023-07-11 16:12:00
[dateCompleted] => 2023-07-12 14:45:00
[bamMd5] => 0e1bd167e4426bed3b947465d1ca16de
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1017343481
[primaryReads] =>
[mappedReads] => 1015937933
[primaryMapped] =>
[pairedReads] => 994032140
[meanInsertSize] => 361.13
[meanReadDepth] => 50.10
[variantsCalled] => 6590514
[variantsFiltered] => 6170616
[snpCount] => 4328128
[snpHom] => 1852145
[snpHet] => 2475983
[indelCount] => 1853616
[insHom] => 302034
[delHom] => 423288
[insHet] => 530160
[delHet] => 640759
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] => ERZ21659485
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659485/CHC_35692-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242