Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN13269030
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 663
[wgsID] => 419
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 1160168984
[FastqRCS] => 0
[enaExperiment] => SRX7136373
[enaRun] => SRR10441637
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1520
[wgsID] => 419
[refGenome] => cf4
[dateSubmitted] => 2024-02-07 14:55:40
[dateCompleted] => 2024-02-09 14:17:41
[bamMd5] => 484813f3320094d81a672614d87f5333
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 619114129
[primaryReads] => 573831143
[mappedReads] => 617367546
[primaryMapped] => 572084560
[pairedReads] => 521110744
[meanInsertSize] => 370.73
[meanReadDepth] => 20.32
[variantsCalled] => 6036932
[variantsFiltered] => 5736131
[snpCount] => 3958306
[snpHom] =>
[snpHet] =>
[indelCount] => 1785158
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
