Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296817
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 645
                    [wgsID] => 22
                    [fwdFile] => CLUS_37314_R1.fastq.gz
                    [fwdMd5] => 405fd959cb684b824639819a110993b1
                    [revFile] => CLUS_37314_R2.fastq.gz
                    [revMd5] => afc728fdbba4e4617d6760fcd1705458
                    [rawReads] => 963018396
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830390
                    [enaRun] => ERR11423082
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 38
                    [wgsID] => 22
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-19 11:00:00
                    [dateCompleted] => 2023-07-20 08:29:00
                    [bamMd5] => 8df9be73045cde1cd5f49b2dbf0455f7
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 895518030
                    [primaryReads] => 
                    [mappedReads] => 894334083
                    [primaryMapped] => 
                    [pairedReads] => 873179170
                    [meanInsertSize] => 364.51
                    [meanReadDepth] => 44.81
                    [variantsCalled] => 6192497
                    [variantsFiltered] => 5791711
                    [snpCount] => 4046523
                    [snpHom] => 2078226
                    [snpHet] => 1968297
                    [indelCount] => 1754318
                    [insHom] => 344791
                    [delHom] => 478434
                    [insHet] => 436282
                    [delHet] => 528252
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659487
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659487/CluS_37314-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242