Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721114
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 616
[wgsID] => 366
[fwdFile] => CluS_39750_R1.fastq.gz
[fwdMd5] => 36eefb2db85b62c5b198f8dd72e8a0c5
[revFile] => CluS_39750_R2.fastq.gz
[revMd5] => df04c4970b71d0ecedbfa9723220224a
[rawReads] => 710286088
[FastqRCS] => 1
[enaExperiment] => ERX10632455
[enaRun] => ERR11203071
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 835
[wgsID] => 366
[refGenome] => cf4
[dateSubmitted] => 2023-06-21 14:37:00
[dateCompleted] => 2023-06-22 08:44:00
[bamMd5] => 960e565c01692ccedaaf82c1b3dfefaa
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 557829156
[primaryReads] =>
[mappedReads] => 557068267
[primaryMapped] =>
[pairedReads] => 534305762
[meanInsertSize] => 337.50
[meanReadDepth] => 25.51
[variantsCalled] => 5883861
[variantsFiltered] => 5563746
[snpCount] => 3887033
[snpHom] => 2206807
[snpHet] => 1680226
[indelCount] => 1684077
[insHom] => 367785
[delHom] => 508374
[insHet] => 375977
[delHet] => 457260
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21817122
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817122/CluS_39750-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242