Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721114
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 616
                    [wgsID] => 366
                    [fwdFile] => CluS_39750_R1.fastq.gz
                    [fwdMd5] => 36eefb2db85b62c5b198f8dd72e8a0c5
                    [revFile] => CluS_39750_R2.fastq.gz
                    [revMd5] => df04c4970b71d0ecedbfa9723220224a
                    [rawReads] => 710286088
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632455
                    [enaRun] => ERR11203071
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 835
                    [wgsID] => 366
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-21 14:37:00
                    [dateCompleted] => 2023-06-22 08:44:00
                    [bamMd5] => 960e565c01692ccedaaf82c1b3dfefaa
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 557829156
                    [primaryReads] => 
                    [mappedReads] => 557068267
                    [primaryMapped] => 
                    [pairedReads] => 534305762
                    [meanInsertSize] => 337.50
                    [meanReadDepth] => 25.51
                    [variantsCalled] => 5883861
                    [variantsFiltered] => 5563746
                    [snpCount] => 3887033
                    [snpHom] => 2206807
                    [snpHet] => 1680226
                    [indelCount] => 1684077
                    [insHom] => 367785
                    [delHom] => 508374
                    [insHet] => 375977
                    [delHet] => 457260
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817122
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817122/CluS_39750-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242