Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189992
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 159
                    [wgsID] => 49
                    [fwdFile] => CS_10842_R1.fastq.gz
                    [fwdMd5] => 1bce3843c8f4f8907cc5ef8e10f1c13f
                    [revFile] => CS_10842_R2.fastq.gz
                    [revMd5] => 093ed11ec3cfbe10cd7b5d041754ad9c
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019020
                    [enaRun] => ERR7448266
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 87
                    [wgsID] => 49
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-01-14 10:25:00
                    [dateCompleted] => 2022-01-15 05:33:00
                    [bamMd5] => c948bf342e1f5556ed4586e9a9a9874b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 950049175
                    [primaryReads] => 
                    [mappedReads] => 946687397
                    [primaryMapped] => 
                    [pairedReads] => 927762388
                    [meanInsertSize] => 531.97
                    [meanReadDepth] => 48.90
                    [variantsCalled] => 6337122
                    [variantsFiltered] => 5925363
                    [snpCount] => 4128529
                    [snpHom] => 2010713
                    [snpHet] => 2117816
                    [indelCount] => 1807288
                    [insHom] => 317765
                    [delHom] => 441596
                    [insHet] => 487248
                    [delHet] => 596872
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659982
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659982/CS_10842-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242