Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189992
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 159
[wgsID] => 49
[fwdFile] => CS_10842_R1.fastq.gz
[fwdMd5] => 1bce3843c8f4f8907cc5ef8e10f1c13f
[revFile] => CS_10842_R2.fastq.gz
[revMd5] => 093ed11ec3cfbe10cd7b5d041754ad9c
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019020
[enaRun] => ERR7448266
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 87
[wgsID] => 49
[refGenome] => cf4
[dateSubmitted] => 2022-01-14 10:25:00
[dateCompleted] => 2022-01-15 05:33:00
[bamMd5] => c948bf342e1f5556ed4586e9a9a9874b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 950049175
[primaryReads] =>
[mappedReads] => 946687397
[primaryMapped] =>
[pairedReads] => 927762388
[meanInsertSize] => 531.97
[meanReadDepth] => 48.90
[variantsCalled] => 6337122
[variantsFiltered] => 5925363
[snpCount] => 4128529
[snpHom] => 2010713
[snpHet] => 2117816
[indelCount] => 1807288
[insHom] => 317765
[delHom] => 441596
[insHet] => 487248
[delHet] => 596872
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21659982
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659982/CS_10842-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242