Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189949
                    [wgsExptID] => 20
                    [Batch] => Edinburgh_10
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 7
                    [DateSubmitted] => 2018-10-23
                    [FastqID] => 162
                    [wgsID] => 48
                    [fwdFile] => CS_35365_R1.fastq.gz
                    [fwdMd5] => 54ae2dd5729363f673357ffaa174a06c
                    [revFile] => CS_35365_R2.fastq.gz
                    [revMd5] => b44cb9279f1d3342b429dad07d44ca23
                    [rawReads] => 826315756
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10158678
                    [enaRun] => ERR10691971
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 75
                    [wgsID] => 48
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-05-10 00:00:00
                    [dateCompleted] => 2022-05-11 14:02:00
                    [bamMd5] => 8360aafdab229e7a017d2f7b3c54b079
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 830921491
                    [primaryReads] => 
                    [mappedReads] => 753350175
                    [primaryMapped] => 
                    [pairedReads] => 739443370
                    [meanInsertSize] => 440.16
                    [meanReadDepth] => 41.19
                    [variantsCalled] => 6541917
                    [variantsFiltered] => 6159678
                    [snpCount] => 4313448
                    [snpHom] => 1793919
                    [snpHet] => 2519529
                    [indelCount] => 1857696
                    [insHom] => 277620
                    [delHom] => 391982
                    [insHet] => 551377
                    [delHet] => 679203
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21736956
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736956/CS_35365-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242