Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790765
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 763
[wgsID] => 471
[fwdFile] => CS_39132_R1.fastq.gz
[fwdMd5] => 3ece612d7ebe97031e9929ea7382f09c
[revFile] => CS_39132_R2.fastq.gz
[revMd5] => 7964ed1109643307ab2182f1d8c413d3
[rawReads] => 963355120
[FastqRCS] => 1
[enaExperiment] => ERX13028961
[enaRun] => ERR13658259
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1674
[wgsID] => 471
[refGenome] => cf4
[dateSubmitted] => 2024-08-22 16:12:11
[dateCompleted] => 2024-08-23 11:31:50
[bamMd5] => 66287c1ba2d6e20ade108e6d38212928
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 900825139
[primaryReads] => 887830936
[mappedReads] => 898386110
[primaryMapped] => 885391907
[pairedReads] => 863889298
[meanInsertSize] => 348.80
[meanReadDepth] => 39.11
[variantsCalled] => 6156577
[variantsFiltered] => 5861258
[snpCount] => 4165341
[snpHom] => 1919989
[snpHet] => 2245352
[indelCount] => 1704616
[insHom] => 345563
[delHom] => 466775
[insHet] => 414880
[delHet] => 508666
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ24876965
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876965/CS_39132-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242