Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790758
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 750
                    [wgsID] => 459
                    [fwdFile] => CS_39368_R1.fastq.gz
                    [fwdMd5] => 1579092c6e34a1e800477d9075c706b8
                    [revFile] => CS_39368_R2.fastq.gz
                    [revMd5] => ea3f061cb215605167b070ef92248b5f
                    [rawReads] => 936576206
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028962
                    [enaRun] => ERR13658260
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1675
                    [wgsID] => 459
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-22 16:12:47
                    [dateCompleted] => 2024-08-23 11:39:47
                    [bamMd5] => 0321db56fa91d3c006719ad988682411
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 932780549
                    [primaryReads] => 920914793
                    [mappedReads] => 930968148
                    [primaryMapped] => 919102392
                    [pairedReads] => 900794380
                    [meanInsertSize] => 343.51
                    [meanReadDepth] => 41.43
                    [variantsCalled] => 5961853
                    [variantsFiltered] => 5647594
                    [snpCount] => 3995753
                    [snpHom] => 2102724
                    [snpHet] => 1893029
                    [indelCount] => 1659636
                    [insHom] => 383404
                    [delHom] => 510612
                    [insHet] => 356495
                    [delHet] => 436720
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876966
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876966/CS_39368-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242