Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN31138973
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 887
[wgsID] => 563
[fwdFile] => SRR21791294_1.fastq.gz
[fwdMd5] => 446c24a9ddef5d61bf60717aa96ff92d
[revFile] => SRR21791294_2.fastq.gz
[revMd5] => 5ef44661b1355a1481eff6ca39dd1cef
[rawReads] => 1029382098
[FastqRCS] => 0
[enaExperiment] => SRX17785275
[enaRun] => SRR21791294
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1756
[wgsID] => 563
[refGenome] => cf4
[dateSubmitted] => 2025-08-01 10:17:04
[dateCompleted] => 2025-08-02 06:18:18
[bamMd5] => 8ff0138c7893ce73607d33b6a7cc254b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 527917927
[primaryReads] => 524817166
[mappedReads] => 527163860
[primaryMapped] => 524063099
[pairedReads] => 516358178
[meanInsertSize] => 323.99
[meanReadDepth] => 24.91
[variantsCalled] => 6572117
[variantsFiltered] => 6196697
[snpCount] => 4406423
[snpHom] => 1938091
[snpHet] => 2468332
[indelCount] => 1799973
[insHom] => 352058
[delHom] => 477736
[insHet] => 456647
[delHet] => 549180
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
