Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190237
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 164
[wgsID] => 207
[fwdFile] => D_32321_R1.fastq.gz
[fwdMd5] => bfd204c597ee8c1a4c346bb4b9dc4f7e
[revFile] => D_32321_R2.fastq.gz
[revMd5] => 322fb023deaba3148a32710b59d8bec2
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX5386789
[enaRun] => ERR5671296
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 352
[wgsID] => 207
[refGenome] => cf4
[dateSubmitted] => 2023-03-17 10:38:00
[dateCompleted] => 2023-03-19 01:16:00
[bamMd5] => 65b23ac11205d96c83e80d44e1ee6a56
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 983095474
[primaryReads] =>
[mappedReads] => 981175541
[primaryMapped] =>
[pairedReads] => 962854468
[meanInsertSize] => 494.78
[meanReadDepth] => 49.53
[variantsCalled] => 6185145
[variantsFiltered] => 5784833
[snpCount] => 4027332
[snpHom] => 1980994
[snpHet] => 2046338
[indelCount] => 1767816
[insHom] => 312521
[delHom] => 434174
[insHet] => 472967
[delHet] => 583527
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21375573
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375573/D_32321-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242