Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190237
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 164
                    [wgsID] => 207
                    [fwdFile] => D_32321_R1.fastq.gz
                    [fwdMd5] => bfd204c597ee8c1a4c346bb4b9dc4f7e
                    [revFile] => D_32321_R2.fastq.gz
                    [revMd5] => 322fb023deaba3148a32710b59d8bec2
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX5386789
                    [enaRun] => ERR5671296
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 352
                    [wgsID] => 207
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-17 10:38:00
                    [dateCompleted] => 2023-03-19 01:16:00
                    [bamMd5] => 65b23ac11205d96c83e80d44e1ee6a56
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 983095474
                    [primaryReads] => 
                    [mappedReads] => 981175541
                    [primaryMapped] => 
                    [pairedReads] => 962854468
                    [meanInsertSize] => 494.78
                    [meanReadDepth] => 49.53
                    [variantsCalled] => 6185145
                    [variantsFiltered] => 5784833
                    [snpCount] => 4027332
                    [snpHom] => 1980994
                    [snpHet] => 2046338
                    [indelCount] => 1767816
                    [insHom] => 312521
                    [delHom] => 434174
                    [insHet] => 472967
                    [delHet] => 583527
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375573
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375573/D_32321-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242