Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190213
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 167
[wgsID] => 139
[fwdFile] => DD_26698_R1.fastq.gz
[fwdMd5] => ac16fc2a48ccd4d45eef33754277f85b
[revFile] => DD_26698_R2.fastq.gz
[revMd5] => 0f677dc0bf56a04ddb5952cd3c9c0ec1
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10686603
[enaRun] => ERR11278903
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 237
[wgsID] => 139
[refGenome] => cf4
[dateSubmitted] => 2022-11-18 12:53:00
[dateCompleted] => 2022-11-19 06:21:00
[bamMd5] => 1ab5157f62085f04431f7053c7c58322
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1027724469
[primaryReads] =>
[mappedReads] => 1020019049
[primaryMapped] =>
[pairedReads] => 1001920076
[meanInsertSize] => 474.38
[meanReadDepth] => 47.41
[variantsCalled] => 6037005
[variantsFiltered] => 5649610
[snpCount] => 3921606
[snpHom] =>
[snpHet] =>
[indelCount] => 1737460
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21782993
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782993/DD_26698-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242