Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190214
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 168
[wgsID] => 143
[fwdFile] => DD_27784_R1.fastq.gz
[fwdMd5] => f2165bcbe6dfb6c93c5b253de4d1a643
[revFile] => DD_27784_R2.fastq.gz
[revMd5] => e1e3655f5faae3c300be927e05b24629
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10686606
[enaRun] => ERR11278906
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 238
[wgsID] => 143
[refGenome] => cf4
[dateSubmitted] => 2022-11-18 12:53:00
[dateCompleted] => 2022-11-19 06:35:00
[bamMd5] => 06c0f48e8242a7fceae8d4b4241bae79
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 991156413
[primaryReads] =>
[mappedReads] => 953525378
[primaryMapped] =>
[pairedReads] => 935147108
[meanInsertSize] => 444.81
[meanReadDepth] => 44.22
[variantsCalled] => 6103574
[variantsFiltered] => 5748928
[snpCount] => 3996777
[snpHom] =>
[snpHet] =>
[indelCount] => 1762319
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21782994
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782994/DD_27784-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242