Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190172
                    [wgsExptID] => 16
                    [Batch] => Edinburgh_6
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 9
                    [DateSubmitted] => 
                    [FastqID] => 169
                    [wgsID] => 247
                    [fwdFile] => DI_29752_R1.fastq.gz
                    [fwdMd5] => e31e225f71167630122499004d83fa89
                    [revFile] => DI_29752_R2.fastq.gz
                    [revMd5] => 97b7fdf30824b0ad898b4cb058bf261f
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10677689
                    [enaRun] => ERR11270101
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 392
                    [wgsID] => 247
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-28 15:37:00
                    [dateCompleted] => 2023-03-29 09:05:00
                    [bamMd5] => 91c3c6c9b87385aafc2ccdd09c571c20
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 878261705
                    [primaryReads] => 
                    [mappedReads] => 875307998
                    [primaryMapped] => 
                    [pairedReads] => 857557330
                    [meanInsertSize] => 465.09
                    [meanReadDepth] => 40.57
                    [variantsCalled] => 6326041
                    [variantsFiltered] => 5992174
                    [snpCount] => 4204684
                    [snpHom] => 1865399
                    [snpHet] => 2339285
                    [indelCount] => 1797805
                    [insHom] => 300958
                    [delHom] => 416473
                    [insHet] => 502909
                    [delHet] => 615936
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21782176
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782176/DI_29752-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242