Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190166
[wgsExptID] => 15
[Batch] => Edinburgh_5
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 5
[DateSubmitted] =>
[FastqID] => 170
[wgsID] => 243
[fwdFile] => ES_32888_R1.fastq.gz
[fwdMd5] => 325e89cbdc917cb811135dc522665d2d
[revFile] => ES_32888_R2.fastq.gz
[revMd5] => 4f3486098e5a9750f53273de7f509145
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679343
[enaRun] => ERR11271773
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 260
[wgsID] => 243
[refGenome] => cf4
[dateSubmitted] => 2022-11-23 08:50:00
[dateCompleted] => 2022-11-24 03:50:00
[bamMd5] => 20b489345fc0cf439e1a0fa492714d7a
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 982798707
[primaryReads] =>
[mappedReads] => 962807810
[primaryMapped] =>
[pairedReads] => 939515112
[meanInsertSize] => 443.55
[meanReadDepth] => 46.95
[variantsCalled] => 5567202
[variantsFiltered] => 5202334
[snpCount] => 3615593
[snpHom] => 2447918
[snpHet] => 1167675
[indelCount] => 1592907
[insHom] => 416897
[delHom] => 559707
[insHet] => 288014
[delHet] => 347893
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21517656
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517656/ES_32888-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242