Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296823
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 646
                    [wgsID] => 23
                    [fwdFile] => ESD_37411_R1.fastq.gz
                    [fwdMd5] => bd043352e265677861c9292ae66d3f31
                    [revFile] => ESD_37411_R2.fastq.gz
                    [revMd5] => ff37d45a5c067c791c293a8d341c0d6d
                    [rawReads] => 832184578
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830391
                    [enaRun] => ERR11423083
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 44
                    [wgsID] => 23
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-19 11:01:00
                    [dateCompleted] => 2023-07-20 07:40:00
                    [bamMd5] => 4eb6e4f1b4dc5d93b9a7489fd4af9706
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 753670016
                    [primaryReads] => 
                    [mappedReads] => 752707541
                    [primaryMapped] => 
                    [pairedReads] => 734259252
                    [meanInsertSize] => 355.98
                    [meanReadDepth] => 36.68
                    [variantsCalled] => 6742954
                    [variantsFiltered] => 6353997
                    [snpCount] => 4469113
                    [snpHom] => 1629624
                    [snpHet] => 2839489
                    [indelCount] => 1896984
                    [insHom] => 259520
                    [delHom] => 370998
                    [insHet] => 588132
                    [delHet] => 724570
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659490
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659490/ESD_37411-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242