Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190092
                    [wgsExptID] => 18
                    [Batch] => Edinburgh_8
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2017-12-12
                    [FastqID] => 172
                    [wgsID] => 303
                    [fwdFile] => ESS_34006_R1.fastq.gz
                    [fwdMd5] => 460616a3845c060877bbb3fdbd52cb6a
                    [revFile] => ESS_34006_R2.fastq.gz
                    [revMd5] => 15564b971e1bf35759db740c4d316aaa
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664700
                    [enaRun] => ERR11256491
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 429
                    [wgsID] => 303
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-02 14:39:00
                    [dateCompleted] => 2023-02-03 09:01:00
                    [bamMd5] => b29d12ee7ab12c8e6b9d34aad52f98f8
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 926543082
                    [primaryReads] => 
                    [mappedReads] => 923428075
                    [primaryMapped] => 
                    [pairedReads] => 902908946
                    [meanInsertSize] => 488.01
                    [meanReadDepth] => 49.81
                    [variantsCalled] => 6418441
                    [variantsFiltered] => 6030875
                    [snpCount] => 4214347
                    [snpHom] => 1866205
                    [snpHet] => 2348142
                    [indelCount] => 1827918
                    [insHom] => 307893
                    [delHom] => 424341
                    [insHet] => 517114
                    [delHet] => 620227
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21778097
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778097/ESS_34006-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242