Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721093
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 581
[wgsID] => 345
[fwdFile] => ESS_36198_R1.fastq.gz
[fwdMd5] => fe8b884408a3d9d57d9660dd44b392e0
[revFile] => ESS_36198_R2.fastq.gz
[revMd5] => 474388c598709b130b4beb3ec8f8fd9f
[rawReads] => 901733478
[FastqRCS] => 1
[enaExperiment] => ERX10632420
[enaRun] => ERR11203036
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 800
[wgsID] => 345
[refGenome] => cf4
[dateSubmitted] => 2023-06-19 12:38:00
[dateCompleted] => 2023-06-20 05:21:00
[bamMd5] => 8bc54407c2bf9e1cf96e9bf45c18aba5
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 799036291
[primaryReads] =>
[mappedReads] => 798023690
[primaryMapped] =>
[pairedReads] => 773088672
[meanInsertSize] => 383.50
[meanReadDepth] => 37.83
[variantsCalled] => 6551962
[variantsFiltered] => 6181444
[snpCount] => 4330248
[snpHom] => 1775120
[snpHet] => 2555128
[indelCount] => 1862569
[insHom] => 286206
[delHom] => 402225
[insHet] => 549799
[delHet] => 667332
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21817123
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817123/ESS_36198-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242