Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721098
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 592
                    [wgsID] => 350
                    [fwdFile] => ESS_37765_R1.fastq.gz
                    [fwdMd5] => c6b22c08b592cad31fdda7e0ab944f34
                    [revFile] => ESS_37765_R2.fastq.gz
                    [revMd5] => 8e1932e2a20c6ed4f64f7f19d88cdbbf
                    [rawReads] => 854190880
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632431
                    [enaRun] => ERR11203047
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 811
                    [wgsID] => 350
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-19 12:39:00
                    [dateCompleted] => 2023-06-20 04:06:00
                    [bamMd5] => f1225e3e73fd13774122282409819203
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 851005091
                    [primaryReads] => 
                    [mappedReads] => 849868191
                    [primaryMapped] => 
                    [pairedReads] => 826439300
                    [meanInsertSize] => 396.19
                    [meanReadDepth] => 42.73
                    [variantsCalled] => 6416470
                    [variantsFiltered] => 6044658
                    [snpCount] => 4228108
                    [snpHom] => 1879663
                    [snpHet] => 2348445
                    [indelCount] => 1827297
                    [insHom] => 306309
                    [delHom] => 426057
                    [insHet] => 514442
                    [delHet] => 621554
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817124
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817124/ESS_37765-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242