Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721098
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 592
[wgsID] => 350
[fwdFile] => ESS_37765_R1.fastq.gz
[fwdMd5] => c6b22c08b592cad31fdda7e0ab944f34
[revFile] => ESS_37765_R2.fastq.gz
[revMd5] => 8e1932e2a20c6ed4f64f7f19d88cdbbf
[rawReads] => 854190880
[FastqRCS] => 1
[enaExperiment] => ERX10632431
[enaRun] => ERR11203047
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 811
[wgsID] => 350
[refGenome] => cf4
[dateSubmitted] => 2023-06-19 12:39:00
[dateCompleted] => 2023-06-20 04:06:00
[bamMd5] => f1225e3e73fd13774122282409819203
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 851005091
[primaryReads] =>
[mappedReads] => 849868191
[primaryMapped] =>
[pairedReads] => 826439300
[meanInsertSize] => 396.19
[meanReadDepth] => 42.73
[variantsCalled] => 6416470
[variantsFiltered] => 6044658
[snpCount] => 4228108
[snpHom] => 1879663
[snpHet] => 2348445
[indelCount] => 1827297
[insHom] => 306309
[delHom] => 426057
[insHet] => 514442
[delHet] => 621554
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21817124
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817124/ESS_37765-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242