Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099842
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 853
[wgsID] => 536
[fwdFile] => ESS_41478_R1.fastq.gz
[fwdMd5] => 32cb447115fb1a11d36a2585f700db70
[revFile] => ESS_41478_R2.fastq.gz
[revMd5] => f09880b2e8ba9eaa8fb1e7fe2bafe2a0
[rawReads] => 1020201124
[FastqRCS] => 1
[enaExperiment] => ERX13611264
[enaRun] => ERR14209044
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1749
[wgsID] => 536
[refGenome] => cf4
[dateSubmitted] => 2025-01-10 13:43:39
[dateCompleted] => 2025-01-11 11:08:13
[bamMd5] => f9d2f143bf361e8e1030a16283a01993
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 710732904
[primaryReads] => 699635083
[mappedReads] => 709609094
[primaryMapped] => 698511273
[pairedReads] => 685528674
[meanInsertSize] => 332.29
[meanReadDepth] => 28.64
[variantsCalled] => 6458208
[variantsFiltered] => 6200732
[snpCount] => 4399875
[snpHom] => 1651533
[snpHet] => 2748342
[indelCount] => 1811294
[insHom] => 291227
[delHom] => 405832
[insHet] => 521082
[delHet] => 634145
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759324
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759324/ESS_41478-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242