Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099844
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 855
[wgsID] => 538
[fwdFile] => ESS_41480_R1.fastq.gz
[fwdMd5] => 3caf56dc5d0829ca1b41642464e982c0
[revFile] => ESS_41480_R2.fastq.gz
[revMd5] => 97e4d3fde38be6f95f05e939e7fe5661
[rawReads] => 1093087678
[FastqRCS] => 1
[enaExperiment] => ERX13611265
[enaRun] => ERR14209045
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1750
[wgsID] => 538
[refGenome] => cf4
[dateSubmitted] => 2025-01-10 13:44:01
[dateCompleted] => 2025-01-11 10:39:16
[bamMd5] => 77c9e644bdad172957bdf8bc61e72822
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 758818748
[primaryReads] => 749556941
[mappedReads] => 757507467
[primaryMapped] => 748245660
[pairedReads] => 735803238
[meanInsertSize] => 347.13
[meanReadDepth] => 30.71
[variantsCalled] => 6452516
[variantsFiltered] => 6131742
[snpCount] => 4342418
[snpHom] => 1769441
[snpHet] => 2572977
[indelCount] => 1799621
[insHom] => 315229
[delHom] => 430394
[insHet] => 492496
[delHet] => 601579
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759326
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759326/ESS_41480-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242