Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099844
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 855
                    [wgsID] => 538
                    [fwdFile] => ESS_41480_R1.fastq.gz
                    [fwdMd5] => 3caf56dc5d0829ca1b41642464e982c0
                    [revFile] => ESS_41480_R2.fastq.gz
                    [revMd5] => 97e4d3fde38be6f95f05e939e7fe5661
                    [rawReads] => 1093087678
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611265
                    [enaRun] => ERR14209045
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1750
                    [wgsID] => 538
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-10 13:44:01
                    [dateCompleted] => 2025-01-11 10:39:16
                    [bamMd5] => 77c9e644bdad172957bdf8bc61e72822
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 758818748
                    [primaryReads] => 749556941
                    [mappedReads] => 757507467
                    [primaryMapped] => 748245660
                    [pairedReads] => 735803238
                    [meanInsertSize] => 347.13
                    [meanReadDepth] => 30.71
                    [variantsCalled] => 6452516
                    [variantsFiltered] => 6131742
                    [snpCount] => 4342418
                    [snpHom] => 1769441
                    [snpHet] => 2572977
                    [indelCount] => 1799621
                    [insHom] => 315229
                    [delHom] => 430394
                    [insHet] => 492496
                    [delHet] => 601579
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759326
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759326/ESS_41480-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242