Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099847
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 858
[wgsID] => 541
[fwdFile] => ESS_41485_R1.fastq.gz
[fwdMd5] => bb57df2a25868015d605ef8edb14161d
[revFile] => ESS_41485_R2.fastq.gz
[revMd5] => c056cecf7f9689726c2f5d635cc8c990
[rawReads] => 1034641122
[FastqRCS] => 1
[enaExperiment] => ERX13611266
[enaRun] => ERR14209046
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1751
[wgsID] => 541
[refGenome] => cf4
[dateSubmitted] => 2025-01-10 13:44:22
[dateCompleted] => 2025-01-11 10:49:57
[bamMd5] => f9ada90e8456b5d3f6e2b4043c3854f6
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 860405762
[primaryReads] => 853928976
[mappedReads] => 859441444
[primaryMapped] => 852964658
[pairedReads] => 839560890
[meanInsertSize] => 401.46
[meanReadDepth] => 34.14
[variantsCalled] => 6060844
[variantsFiltered] => 5781127
[snpCount] => 4078192
[snpHom] => 1965815
[snpHet] => 2112377
[indelCount] => 1711467
[insHom] => 357244
[delHom] => 482026
[insHet] => 408457
[delHet] => 496650
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759331
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759331/ESS_41485-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242