Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099847
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 858
                    [wgsID] => 541
                    [fwdFile] => ESS_41485_R1.fastq.gz
                    [fwdMd5] => bb57df2a25868015d605ef8edb14161d
                    [revFile] => ESS_41485_R2.fastq.gz
                    [revMd5] => c056cecf7f9689726c2f5d635cc8c990
                    [rawReads] => 1034641122
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611266
                    [enaRun] => ERR14209046
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1751
                    [wgsID] => 541
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-10 13:44:22
                    [dateCompleted] => 2025-01-11 10:49:57
                    [bamMd5] => f9ada90e8456b5d3f6e2b4043c3854f6
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 860405762
                    [primaryReads] => 853928976
                    [mappedReads] => 859441444
                    [primaryMapped] => 852964658
                    [pairedReads] => 839560890
                    [meanInsertSize] => 401.46
                    [meanReadDepth] => 34.14
                    [variantsCalled] => 6060844
                    [variantsFiltered] => 5781127
                    [snpCount] => 4078192
                    [snpHom] => 1965815
                    [snpHet] => 2112377
                    [indelCount] => 1711467
                    [insHom] => 357244
                    [delHom] => 482026
                    [insHet] => 408457
                    [delHet] => 496650
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759331
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759331/ESS_41485-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242