Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099848
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 859
                    [wgsID] => 542
                    [fwdFile] => ESS_41486_R1.fastq.gz
                    [fwdMd5] => 44a5227678bdcc1a35dfeb534c107daa
                    [revFile] => ESS_41486_R2.fastq.gz
                    [revMd5] => 93c8f0077ac29187227d0bd20f70910e
                    [rawReads] => 1068385834
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611267
                    [enaRun] => ERR14209047
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1711
                    [wgsID] => 542
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-25 11:08:31
                    [dateCompleted] => 2024-12-26 04:47:30
                    [bamMd5] => 3cf9e059bf69e922dac80aff9366ccf4
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 892222126
                    [primaryReads] => 884692633
                    [mappedReads] => 891185600
                    [primaryMapped] => 883656107
                    [pairedReads] => 869362212
                    [meanInsertSize] => 390.88
                    [meanReadDepth] => 34.80
                    [variantsCalled] => 6391571
                    [variantsFiltered] => 6083040
                    [snpCount] => 4304779
                    [snpHom] => 1771773
                    [snpHet] => 2533006
                    [indelCount] => 1788379
                    [insHom] => 315974
                    [delHom] => 433629
                    [insHet] => 487100
                    [delHet] => 590796
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759337
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759337/ESS_41486-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242