Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099859
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 870
                    [wgsID] => 553
                    [fwdFile] => ESS_41530_R1.fastq.gz
                    [fwdMd5] => 2c14e41cd9b506b2cdd1ffd6c9874efe
                    [revFile] => ESS_41530_R2.fastq.gz
                    [revMd5] => 16576c7573a665a337f6a4a9ca570b5b
                    [rawReads] => 1360088164
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611272
                    [enaRun] => ERR14209052
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1715
                    [wgsID] => 553
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-25 11:10:19
                    [dateCompleted] => 2024-12-26 09:09:37
                    [bamMd5] => 4fc545c4e0436e1cf3a68cf8a358bf6f
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1092888077
                    [primaryReads] => 1079890234
                    [mappedReads] => 1091576472
                    [primaryMapped] => 1078578629
                    [pairedReads] => 1061858370
                    [meanInsertSize] => 344.17
                    [meanReadDepth] => 42.71
                    [variantsCalled] => 6371841
                    [variantsFiltered] => 6061023
                    [snpCount] => 4266409
                    [snpHom] => 1818986
                    [snpHet] => 2447423
                    [indelCount] => 1805080
                    [insHom] => 327135
                    [delHom] => 445734
                    [insHet] => 484950
                    [delHet] => 587979
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759335
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759335/ESS_41530-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242