Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189961
[wgsExptID] => 4
[Batch] => Oxford_3
[SeqLaboratory] => Wellcome Trust Centre for Human Genetics
[Platform] => Illumina
[InstrumentModel] => HiSeq 1000
[ReadType] => 100bp:PAIRED
[LibraryPrep] => WTCHG, PCR FREE
[PcrFree] => Y
[SampleCount] => 4
[DateSubmitted] =>
[FastqID] => 455
[wgsID] => 93
[fwdFile] => FBD_26569_R1.fastq.gz
[fwdMd5] => 93eb90f2eab8b35d0ba92c90310b895e
[revFile] => FBD_26569_R2.fastq.gz
[revMd5] => eb48139f921e5456865e1e953aff3104
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10158670
[enaRun] => ERR10691963
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 277
[wgsID] => 93
[refGenome] => cf4
[dateSubmitted] => 2023-02-07 11:33:00
[dateCompleted] => 2023-02-08 04:35:00
[bamMd5] => 03322f85cc3e4843f41101b7c579dae5
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 754977673
[primaryReads] =>
[mappedReads] => 750695514
[primaryMapped] =>
[pairedReads] => 722405376
[meanInsertSize] => 355.01
[meanReadDepth] => 27.96
[variantsCalled] => 6057399
[variantsFiltered] => 5753604
[snpCount] => 4126465
[snpHom] =>
[snpHet] =>
[indelCount] => 1635291
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21790193
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790193/FBD_26569-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242