Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189981
[wgsExptID] => 20
[Batch] => Edinburgh_10
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 7
[DateSubmitted] => 2018-10-23
[FastqID] => 176
[wgsID] => 44
[fwdFile] => FBD_33745_R1.fastq.gz
[fwdMd5] => 0158126314fe566ad148e8fd5e49386b
[revFile] => FBD_33745_R2.fastq.gz
[revMd5] => 4d3d4d2f5585b2bbf2e6d6855874bfe9
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10644419
[enaRun] => ERR11217528
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 76
[wgsID] => 44
[refGenome] => cf4
[dateSubmitted] => 2022-10-07 13:42:00
[dateCompleted] => 2022-10-08 06:15:00
[bamMd5] => 3711c3161bd4f04f1ef78ebf65f5ddb5
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 835328511
[primaryReads] =>
[mappedReads] => 828637920
[primaryMapped] =>
[pairedReads] => 805587706
[meanInsertSize] => 491.21
[meanReadDepth] => 44.92
[variantsCalled] => 6340530
[variantsFiltered] => 5947351
[snpCount] => 4152651
[snpHom] => 1912100
[snpHet] => 2240551
[indelCount] => 1805622
[insHom] => 303932
[delHom] => 424166
[insHet] => 500675
[delHet] => 614393
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21736957
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736957/FBD_33745-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242