Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721108
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 607
                    [wgsID] => 360
                    [fwdFile] => FBD_39493_R1.fastq.gz
                    [fwdMd5] => a598832fc0755bef2d50e535afae567f
                    [revFile] => FBD_39493_R2.fastq.gz
                    [revMd5] => da5b6abce738243b1956c0226d447a55
                    [rawReads] => 712527948
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632446
                    [enaRun] => ERR11203062
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 826
                    [wgsID] => 360
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-20 10:02:00
                    [dateCompleted] => 2023-06-21 00:17:00
                    [bamMd5] => c9c056a203c73957ee1b40bf2afb600a
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 684908690
                    [primaryReads] => 
                    [mappedReads] => 684119340
                    [primaryMapped] => 
                    [pairedReads] => 665988776
                    [meanInsertSize] => 404.74
                    [meanReadDepth] => 34.56
                    [variantsCalled] => 6403939
                    [variantsFiltered] => 6028529
                    [snpCount] => 4225307
                    [snpHom] => 1865614
                    [snpHet] => 2359693
                    [indelCount] => 1813805
                    [insHom] => 303681
                    [delHom] => 424344
                    [insHet] => 506762
                    [delHet] => 617912
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817126
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817126/FBD_39493-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242