Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190093
[wgsExptID] => 18
[Batch] => Edinburgh_8
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2017-12-12
[FastqID] => 177
[wgsID] => 309
[fwdFile] => FCR_34446_R1.fastq.gz
[fwdMd5] => b47f26485a27ee53b64757d983251177
[revFile] => FCR_34446_R2.fastq.gz
[revMd5] => 0f6af1551a620d3b01e4e985ae7fe737
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10664706
[enaRun] => ERR11256497
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 435
[wgsID] => 309
[refGenome] => cf4
[dateSubmitted] => 2023-02-03 10:44:00
[dateCompleted] => 2023-02-04 07:18:00
[bamMd5] => 44f0d2ca107a42bce184a3ffe3e3e6dd
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 941180506
[primaryReads] =>
[mappedReads] => 933074548
[primaryMapped] =>
[pairedReads] => 892158160
[meanInsertSize] => 537.27
[meanReadDepth] => 48.60
[variantsCalled] => 6344065
[variantsFiltered] => 5869345
[snpCount] => 4098214
[snpHom] => 1967559
[snpHet] => 2130655
[indelCount] => 1781189
[insHom] => 313211
[delHom] => 434701
[insHet] => 480587
[delHet] => 588979
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21778098
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778098/FCR_34446-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242