Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189962
                    [wgsExptID] => 4
                    [Batch] => Oxford_3
                    [SeqLaboratory] => Wellcome Trust Centre for Human Genetics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq 1000
                    [ReadType] => 100bp:PAIRED
                    [LibraryPrep] => WTCHG, PCR FREE
                    [PcrFree] => Y
                    [SampleCount] => 4
                    [DateSubmitted] => 
                    [FastqID] => 456
                    [wgsID] => 94
                    [fwdFile] => FCR_7897_R1.fastq.gz
                    [fwdMd5] => 2062ff2aa08013aa9d566131eb336c70
                    [revFile] => FCR_7897_R2.fastq.gz
                    [revMd5] => 1f04afeea4b573881b5f00df7b321fde
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10158669
                    [enaRun] => ERR10691962
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 274
                    [wgsID] => 94
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-07 11:34:00
                    [dateCompleted] => 2023-02-08 01:25:00
                    [bamMd5] => 627d44c7106cf576ea36c4668c9c0927
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 740889294
                    [primaryReads] => 
                    [mappedReads] => 738800257
                    [primaryMapped] => 
                    [pairedReads] => 722120150
                    [meanInsertSize] => 386.74
                    [meanReadDepth] => 27.82
                    [variantsCalled] => 5859360
                    [variantsFiltered] => 5521928
                    [snpCount] => 3922938
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1606467
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21790194
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790194/FCR_7897-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242