Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189987
[wgsExptID] => 21
[Batch] => Edinburgh_11
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 5
[DateSubmitted] => 2018-11-13
[FastqID] => 180
[wgsID] => 38
[fwdFile] => FS_35083_R1.fastq.gz
[fwdMd5] => 1f3202e385895a47deca2d7c6e0010f8
[revFile] => FS_35083_R2.fastq.gz
[revMd5] => b3f647c59b0ae1382433c3fe8e375d96
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10641007
[enaRun] => ERR11213959
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 82
[wgsID] => 38
[refGenome] => cf4
[dateSubmitted] => 2022-10-06 12:46:00
[dateCompleted] => 2022-10-07 04:46:00
[bamMd5] => 56a5660958388cbdedb9b87093c8eae3
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 849477885
[primaryReads] =>
[mappedReads] => 837465896
[primaryMapped] =>
[pairedReads] => 811460326
[meanInsertSize] => 429.54
[meanReadDepth] => 38.91
[variantsCalled] => 6194534
[variantsFiltered] => 5786232
[snpCount] => 4016201
[snpHom] => 2044757
[snpHet] => 1971444
[indelCount] => 1779818
[insHom] => 323064
[delHom] => 449907
[insHet] => 464751
[delHet] => 575832
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21736963
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736963/FS_35083-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242