Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190187
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 182
                    [wgsID] => 272
                    [fwdFile] => GB_33717_R1.fastq.gz
                    [fwdMd5] => 068d399a4a546f88c76d0d2669ff788d
                    [revFile] => GB_33717_R2.fastq.gz
                    [revMd5] => 18339561c7730ccd4655e91969928ce1
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665923
                    [enaRun] => ERR11257714
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 410
                    [wgsID] => 272
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-04-05 15:16:00
                    [dateCompleted] => 2023-04-06 08:02:00
                    [bamMd5] => 1ae877913b7219f6b86ebd89e4d03aa8
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 878273277
                    [primaryReads] => 
                    [mappedReads] => 875375935
                    [primaryMapped] => 
                    [pairedReads] => 857725314
                    [meanInsertSize] => 465.28
                    [meanReadDepth] => 45.31
                    [variantsCalled] => 6100740
                    [variantsFiltered] => 5725764
                    [snpCount] => 3989783
                    [snpHom] => 2135537
                    [snpHet] => 1854246
                    [indelCount] => 1745319
                    [insHom] => 348824
                    [delHom] => 479278
                    [insHet] => 430486
                    [delHet] => 518928
                    [genomicsDB] => cf4-toy
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780961
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780961/GB_33717-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242