Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190187
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 182
[wgsID] => 272
[fwdFile] => GB_33717_R1.fastq.gz
[fwdMd5] => 068d399a4a546f88c76d0d2669ff788d
[revFile] => GB_33717_R2.fastq.gz
[revMd5] => 18339561c7730ccd4655e91969928ce1
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10665923
[enaRun] => ERR11257714
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 410
[wgsID] => 272
[refGenome] => cf4
[dateSubmitted] => 2023-04-05 15:16:00
[dateCompleted] => 2023-04-06 08:02:00
[bamMd5] => 1ae877913b7219f6b86ebd89e4d03aa8
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 878273277
[primaryReads] =>
[mappedReads] => 875375935
[primaryMapped] =>
[pairedReads] => 857725314
[meanInsertSize] => 465.28
[meanReadDepth] => 45.31
[variantsCalled] => 6100740
[variantsFiltered] => 5725764
[snpCount] => 3989783
[snpHom] => 2135537
[snpHet] => 1854246
[indelCount] => 1745319
[insHom] => 348824
[delHom] => 479278
[insHet] => 430486
[delHet] => 518928
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] => ERZ21780961
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780961/GB_33717-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242