Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190173
                    [wgsExptID] => 16
                    [Batch] => Edinburgh_6
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 9
                    [DateSubmitted] => 
                    [FastqID] => 184
                    [wgsID] => 250
                    [fwdFile] => GIT_33179_R1.fastq.gz
                    [fwdMd5] => d54ee12f46b21a2742d38b76b165fb2a
                    [revFile] => GIT_33179_R2.fastq.gz
                    [revMd5] => 6821ff77fd2e310e3a32a583e9e4b7c2
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10677691
                    [enaRun] => ERR11270103
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 225
                    [wgsID] => 250
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-20 12:43:00
                    [dateCompleted] => 2022-10-21 11:04:00
                    [bamMd5] => 7d0be3326bfd61e1d52db6eaa81ba1ed
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 927905866
                    [primaryReads] => 
                    [mappedReads] => 838448665
                    [primaryMapped] => 
                    [pairedReads] => 820022964
                    [meanInsertSize] => 447.90
                    [meanReadDepth] => 39.73
                    [variantsCalled] => 6194934
                    [variantsFiltered] => 5850134
                    [snpCount] => 4098694
                    [snpHom] => 1957720
                    [snpHet] => 2140974
                    [indelCount] => 1761050
                    [insHom] => 321797
                    [delHom] => 442335
                    [insHet] => 464652
                    [delHet] => 567029
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21782177
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782177/GIT_33179-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242