Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190161
[wgsExptID] => 14
[Batch] => Edinburgh_4
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 13
[DateSubmitted] =>
[FastqID] => 186
[wgsID] => 227
[fwdFile] => GR_26798_R1.fastq.gz
[fwdMd5] => 0f9198620e78c44800284196957e2fd6
[revFile] => GR_26798_R2.fastq.gz
[revMd5] => 541fdf689eaf3243536c1bf2152c6194
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679331
[enaRun] => ERR11271761
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 371
[wgsID] => 227
[refGenome] => cf4
[dateSubmitted] => 2023-03-22 11:09:00
[dateCompleted] => 2023-03-23 06:22:00
[bamMd5] => 6e5a1749f7245ec837a38eee49d9b6c9
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 957654551
[primaryReads] =>
[mappedReads] => 955675147
[primaryMapped] =>
[pairedReads] => 937648052
[meanInsertSize] => 456.60
[meanReadDepth] => 33.63
[variantsCalled] => 6296049
[variantsFiltered] => 5963476
[snpCount] => 4179736
[snpHom] => 1900212
[snpHet] => 2279524
[indelCount] => 1793691
[insHom] => 311682
[delHom] => 430512
[insHet] => 490324
[delHet] => 597476
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21517645
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517645/GR_26798-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242