Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190239
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 187
[wgsID] => 212
[fwdFile] => GR_32558_R1.fastq.gz
[fwdMd5] => 8814937f136aab9fe535928b5f56c9b4
[revFile] => GR_32558_R2.fastq.gz
[revMd5] => 07e2e2ed8370614b80921a34bc0a78f7
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679358
[enaRun] => ERR11271788
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 357
[wgsID] => 212
[refGenome] => cf4
[dateSubmitted] => 2023-03-21 15:14:00
[dateCompleted] => 2023-03-22 12:57:00
[bamMd5] => 6480afc0a8181878d9050bb0b81d108b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1042858074
[primaryReads] =>
[mappedReads] => 1041392191
[primaryMapped] =>
[pairedReads] => 1020179344
[meanInsertSize] => 458.18
[meanReadDepth] => 47.39
[variantsCalled] => 6244235
[variantsFiltered] => 5807597
[snpCount] => 4038380
[snpHom] => 2028623
[snpHet] => 2009757
[indelCount] => 1779225
[insHom] => 319592
[delHom] => 443742
[insHet] => 470782
[delHet] => 579670
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21375578
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375578/GR_32558-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242