Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190239
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 187
                    [wgsID] => 212
                    [fwdFile] => GR_32558_R1.fastq.gz
                    [fwdMd5] => 8814937f136aab9fe535928b5f56c9b4
                    [revFile] => GR_32558_R2.fastq.gz
                    [revMd5] => 07e2e2ed8370614b80921a34bc0a78f7
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679358
                    [enaRun] => ERR11271788
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 357
                    [wgsID] => 212
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-21 15:14:00
                    [dateCompleted] => 2023-03-22 12:57:00
                    [bamMd5] => 6480afc0a8181878d9050bb0b81d108b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1042858074
                    [primaryReads] => 
                    [mappedReads] => 1041392191
                    [primaryMapped] => 
                    [pairedReads] => 1020179344
                    [meanInsertSize] => 458.18
                    [meanReadDepth] => 47.39
                    [variantsCalled] => 6244235
                    [variantsFiltered] => 5807597
                    [snpCount] => 4038380
                    [snpHom] => 2028623
                    [snpHet] => 2009757
                    [indelCount] => 1779225
                    [insHom] => 319592
                    [delHom] => 443742
                    [insHet] => 470782
                    [delHet] => 579670
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375578
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375578/GR_32558-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242