Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA5560216
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 189
[wgsID] => 150
[fwdFile] => GS_29746_R1.fastq.gz
[fwdMd5] => c1661b3970765415d550b618875aa010
[revFile] => GS_29746_R2.fastq.gz
[revMd5] => ce55137e57603854e0c11b34040c5793
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX3311518
[enaRun] => ERR3284984
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 323
[wgsID] => 150
[refGenome] => cf4
[dateSubmitted] => 2023-03-14 08:51:00
[dateCompleted] => 2023-03-15 04:39:00
[bamMd5] => ed1b8fc2e723ae92805d8cab21a7f206
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 880005664
[primaryReads] =>
[mappedReads] => 878782230
[primaryMapped] =>
[pairedReads] => 860935898
[meanInsertSize] => 459.71
[meanReadDepth] => 42.84
[variantsCalled] => 6476714
[variantsFiltered] => 6075803
[snpCount] => 4236783
[snpHom] =>
[snpHet] =>
[indelCount] => 1850148
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21783001
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783001/GS_29746-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242