Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA5560218
                    [wgsExptID] => 12
                    [Batch] => Edinburgh_2
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 36
                    [DateSubmitted] => 
                    [FastqID] => 191
                    [wgsID] => 156
                    [fwdFile] => GS_32059_R1.fastq.gz
                    [fwdMd5] => 394b5561c1a3f194b51d23ab8dd734b3
                    [revFile] => GS_32059_R2.fastq.gz
                    [revMd5] => a225f711cf9e3300114652ccc8a74fda
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX3311516
                    [enaRun] => ERR3284982
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 329
                    [wgsID] => 156
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-07 12:48:00
                    [dateCompleted] => 2023-03-08 08:13:00
                    [bamMd5] => fee0d846c4af0410334bbe512b244b02
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 779839487
                    [primaryReads] => 
                    [mappedReads] => 778270399
                    [primaryMapped] => 
                    [pairedReads] => 763381106
                    [meanInsertSize] => 425.71
                    [meanReadDepth] => 36.34
                    [variantsCalled] => 6429664
                    [variantsFiltered] => 6098507
                    [snpCount] => 4261236
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1848482
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ21783003
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783003/GS_32059-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242