Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190188
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 192
[wgsID] => 268
[fwdFile] => GS_32603_R1.fastq.gz
[fwdMd5] => fc685ff1ecba15bca3d7ef47a1d39002
[revFile] => GS_32603_R2.fastq.gz
[revMd5] => 847ac7b158ad66fc5ad04ae6ff246d3b
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10665919
[enaRun] => ERR11257710
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 406
[wgsID] => 268
[refGenome] => cf4
[dateSubmitted] => 2023-04-05 15:14:00
[dateCompleted] => 2023-04-06 08:55:00
[bamMd5] => 169c8762532d32f6cc0ccc7760a739d9
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 930594198
[primaryReads] =>
[mappedReads] => 927370748
[primaryMapped] =>
[pairedReads] => 908774124
[meanInsertSize] => 488.89
[meanReadDepth] => 47.54
[variantsCalled] => 6492946
[variantsFiltered] => 6113785
[snpCount] => 4276068
[snpHom] => 1802814
[snpHet] => 2473254
[indelCount] => 1849173
[insHom] => 285899
[delHom] => 399870
[insHet] => 549083
[delHet] => 658050
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21780962
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780962/GS_32603-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242