Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099817
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 828
[wgsID] => 511
[fwdFile] => GS_33217_R1.fastq.gz
[fwdMd5] => 75f54e64b7e44ddc404a59cfa5a2ef3c
[revFile] => GS_33217_R2.fastq.gz
[revMd5] => d3339c235005d6a0921b491d9ed639e2
[rawReads] => 1116975134
[FastqRCS] => 1
[enaExperiment] => ERX13611275
[enaRun] => ERR14209055
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1718
[wgsID] => 511
[refGenome] => cf4
[dateSubmitted] => 2024-12-26 10:31:47
[dateCompleted] => 2024-12-27 06:26:39
[bamMd5] => 02445fe58b3551bf001f13db76123f7a
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 935320818
[primaryReads] => 926533624
[mappedReads] => 934322382
[primaryMapped] => 925535188
[pairedReads] => 911866648
[meanInsertSize] => 376.21
[meanReadDepth] => 36.74
[variantsCalled] => 6286494
[variantsFiltered] => 5982778
[snpCount] => 4221112
[snpHom] => 1847141
[snpHet] => 2373971
[indelCount] => 1771205
[insHom] => 333708
[delHom] => 452652
[insHet] => 461150
[delHet] => 561354
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ25759348
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759348/GS_33217-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242