Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099829
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 840
[wgsID] => 523
[fwdFile] => GS_41294_R1.fastq.gz
[fwdMd5] => 6bf1545fea9f4f806907ee7c20255eca
[revFile] => GS_41294_R2.fastq.gz
[revMd5] => f3309320dbf2b617babd05f9bcbead01
[rawReads] => 1212380486
[FastqRCS] => 1
[enaExperiment] => ERX13611276
[enaRun] => ERR14209056
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1719
[wgsID] => 523
[refGenome] => cf4
[dateSubmitted] => 2024-12-26 10:32:15
[dateCompleted] => 2024-12-27 07:07:38
[bamMd5] => a248d8b1ee6d1c0a4f6fcd4228c05146
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 852128363
[primaryReads] => 842535290
[mappedReads] => 850881819
[primaryMapped] => 841288746
[pairedReads] => 828289194
[meanInsertSize] => 348.44
[meanReadDepth] => 34.09
[variantsCalled] => 6138569
[variantsFiltered] => 5848579
[snpCount] => 4122260
[snpHom] => 1282695
[snpHet] => 2839565
[indelCount] => 1735926
[insHom] => 231575
[delHom] => 339511
[insHet] => 539221
[delHet] => 667010
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ25759346
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759346/GS_41294-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242