Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099829
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 840
                    [wgsID] => 523
                    [fwdFile] => GS_41294_R1.fastq.gz
                    [fwdMd5] => 6bf1545fea9f4f806907ee7c20255eca
                    [revFile] => GS_41294_R2.fastq.gz
                    [revMd5] => f3309320dbf2b617babd05f9bcbead01
                    [rawReads] => 1212380486
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611276
                    [enaRun] => ERR14209056
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1719
                    [wgsID] => 523
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-26 10:32:15
                    [dateCompleted] => 2024-12-27 07:07:38
                    [bamMd5] => a248d8b1ee6d1c0a4f6fcd4228c05146
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 852128363
                    [primaryReads] => 842535290
                    [mappedReads] => 850881819
                    [primaryMapped] => 841288746
                    [pairedReads] => 828289194
                    [meanInsertSize] => 348.44
                    [meanReadDepth] => 34.09
                    [variantsCalled] => 6138569
                    [variantsFiltered] => 5848579
                    [snpCount] => 4122260
                    [snpHom] => 1282695
                    [snpHet] => 2839565
                    [indelCount] => 1735926
                    [insHom] => 231575
                    [delHom] => 339511
                    [insHet] => 539221
                    [delHet] => 667010
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759346
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759346/GS_41294-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242