Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099836
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 847
                    [wgsID] => 530
                    [fwdFile] => GS_41440_R1.fastq.gz
                    [fwdMd5] => 27d0bdc0ddf9805bde4fae53d54c4c83
                    [revFile] => GS_41440_R2.fastq.gz
                    [revMd5] => 378498153d7477833bfe3286a07476bf
                    [rawReads] => 972609516
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611277
                    [enaRun] => ERR14209057
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1720
                    [wgsID] => 530
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-26 10:32:38
                    [dateCompleted] => 2024-12-27 07:01:19
                    [bamMd5] => 0901a18c7a3e7032b3e496e0cf9cab0a
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 740870066
                    [primaryReads] => 732180521
                    [mappedReads] => 739889986
                    [primaryMapped] => 731200441
                    [pairedReads] => 719930886
                    [meanInsertSize] => 342.23
                    [meanReadDepth] => 29.42
                    [variantsCalled] => 6255529
                    [variantsFiltered] => 5958583
                    [snpCount] => 4220649
                    [snpHom] => 1874616
                    [snpHet] => 2346033
                    [indelCount] => 1747164
                    [insHom] => 337679
                    [delHom] => 460600
                    [insHet] => 443463
                    [delHet] => 540586
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759349
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759349/GS_41440-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242