Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099836
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 847
[wgsID] => 530
[fwdFile] => GS_41440_R1.fastq.gz
[fwdMd5] => 27d0bdc0ddf9805bde4fae53d54c4c83
[revFile] => GS_41440_R2.fastq.gz
[revMd5] => 378498153d7477833bfe3286a07476bf
[rawReads] => 972609516
[FastqRCS] => 1
[enaExperiment] => ERX13611277
[enaRun] => ERR14209057
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1720
[wgsID] => 530
[refGenome] => cf4
[dateSubmitted] => 2024-12-26 10:32:38
[dateCompleted] => 2024-12-27 07:01:19
[bamMd5] => 0901a18c7a3e7032b3e496e0cf9cab0a
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 740870066
[primaryReads] => 732180521
[mappedReads] => 739889986
[primaryMapped] => 731200441
[pairedReads] => 719930886
[meanInsertSize] => 342.23
[meanReadDepth] => 29.42
[variantsCalled] => 6255529
[variantsFiltered] => 5958583
[snpCount] => 4220649
[snpHom] => 1874616
[snpHet] => 2346033
[indelCount] => 1747164
[insHom] => 337679
[delHom] => 460600
[insHet] => 443463
[delHet] => 540586
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ25759349
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759349/GS_41440-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242