Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099837
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 848
                    [wgsID] => 531
                    [fwdFile] => GS_41451_R1.fastq.gz
                    [fwdMd5] => 4777852074c847d9193e764c126b0a3e
                    [revFile] => GS_41451_R2.fastq.gz
                    [revMd5] => f163939d9822c808cb57519d1b23455d
                    [rawReads] => 1004115514
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611278
                    [enaRun] => ERR14209058
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1701
                    [wgsID] => 531
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-23 11:50:28
                    [dateCompleted] => 2024-12-24 06:46:47
                    [bamMd5] => 4c5a85646b3b5cc5ed5a0b4ab6cbe047
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 675038664
                    [primaryReads] => 666025826
                    [mappedReads] => 674060186
                    [primaryMapped] => 665047348
                    [pairedReads] => 653567106
                    [meanInsertSize] => 343.76
                    [meanReadDepth] => 26.99
                    [variantsCalled] => 6212340
                    [variantsFiltered] => 5946979
                    [snpCount] => 4217194
                    [snpHom] => 1855721
                    [snpHet] => 2361473
                    [indelCount] => 1738475
                    [insHom] => 336081
                    [delHom] => 456550
                    [insHet] => 439284
                    [delHet] => 540510
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759345
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759345/GS_41451-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242