Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099839
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 850
                    [wgsID] => 533
                    [fwdFile] => GS_41453_R1.fastq.gz
                    [fwdMd5] => 561a593da3b50acdaf97e6d489bb87ac
                    [revFile] => GS_41453_R2.fastq.gz
                    [revMd5] => 809b56f547b80e1d7677e75b3224c78e
                    [rawReads] => 1071814684
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611280
                    [enaRun] => ERR14209060
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1722
                    [wgsID] => 533
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-26 10:33:23
                    [dateCompleted] => 2024-12-27 07:01:20
                    [bamMd5] => 39eef32fe60de8ad285d72fd1ca00cc0
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 830478992
                    [primaryReads] => 820052090
                    [mappedReads] => 829538662
                    [primaryMapped] => 819111760
                    [pairedReads] => 807358836
                    [meanInsertSize] => 329.66
                    [meanReadDepth] => 31.81
                    [variantsCalled] => 6342603
                    [variantsFiltered] => 6052956
                    [snpCount] => 4274747
                    [snpHom] => 1812385
                    [snpHet] => 2462362
                    [indelCount] => 1788142
                    [insHom] => 324832
                    [delHom] => 444418
                    [insHet] => 477566
                    [delHet] => 580286
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759352
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759352/GS_41453-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242