Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099841
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 852
                    [wgsID] => 535
                    [fwdFile] => GS_41464_R1.fastq.gz
                    [fwdMd5] => d9211de69be3399ebd043987771003ae
                    [revFile] => GS_41464_R2.fastq.gz
                    [revMd5] => 98e01c7b641cd3438ddbb844f13de4ff
                    [rawReads] => 1068947544
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611282
                    [enaRun] => ERR14209062
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1724
                    [wgsID] => 535
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-27 09:38:33
                    [dateCompleted] => 2024-12-28 00:45:48
                    [bamMd5] => c80023cad69e84049a2d4d9f3243a904
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 628042505
                    [primaryReads] => 620503474
                    [mappedReads] => 626817470
                    [primaryMapped] => 619278439
                    [pairedReads] => 608125214
                    [meanInsertSize] => 357.32
                    [meanReadDepth] => 24.74
                    [variantsCalled] => 6145334
                    [variantsFiltered] => 5877330
                    [snpCount] => 4170629
                    [snpHom] => 1798722
                    [snpHet] => 2371907
                    [indelCount] => 1715079
                    [insHom] => 324514
                    [delHom] => 447077
                    [insHet] => 440521
                    [delHet] => 535503
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759351
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759351/GS_41464-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242