Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190189
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 193
                    [wgsID] => 275
                    [fwdFile] => GSD_33831_R1.fastq.gz
                    [fwdMd5] => 9a1c74417e3bb80e7a780e395262b71c
                    [revFile] => GSD_33831_R2.fastq.gz
                    [revMd5] => 4388dd3be46e4f816506dae660c6eb12
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665925
                    [enaRun] => ERR11257716
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 413
                    [wgsID] => 275
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-04-05 15:17:00
                    [dateCompleted] => 2023-04-06 08:31:00
                    [bamMd5] => b09083b8ee32946425d664dbb076ec22
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 955671305
                    [primaryReads] => 
                    [mappedReads] => 953710542
                    [primaryMapped] => 
                    [pairedReads] => 939600024
                    [meanInsertSize] => 499.19
                    [meanReadDepth] => 47.35
                    [variantsCalled] => 4464102
                    [variantsFiltered] => 4147702
                    [snpCount] => 2779287
                    [snpHom] => 971508
                    [snpHet] => 1807779
                    [indelCount] => 1375524
                    [insHom] => 172195
                    [delHom] => 275717
                    [insHet] => 409515
                    [delHet] => 553407
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780963
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780963/GSD_33831-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242