Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721123
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 598
                    [wgsID] => 375
                    [fwdFile] => GSP_38076_R1.fastq.gz
                    [fwdMd5] => fbd651e080a0f266bf379ac05cd80dc5
                    [revFile] => GSP_38076_R2.fastq.gz
                    [revMd5] => 91309f4cee4a82e1878ca8a2e1c25f7e
                    [rawReads] => 786221682
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632437
                    [enaRun] => ERR11203053
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 817
                    [wgsID] => 375
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-20 10:02:00
                    [dateCompleted] => 2023-06-21 00:56:00
                    [bamMd5] => ddca61c0fa12a13242defc10aaafe700
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 796273683
                    [primaryReads] => 
                    [mappedReads] => 795628512
                    [primaryMapped] => 
                    [pairedReads] => 775658222
                    [meanInsertSize] => 315.99
                    [meanReadDepth] => 35.34
                    [variantsCalled] => 6604513
                    [variantsFiltered] => 6255971
                    [snpCount] => 4384464
                    [snpHom] => 1730184
                    [snpHet] => 2654280
                    [indelCount] => 1883065
                    [insHom] => 277312
                    [delHom] => 392852
                    [insHet] => 564702
                    [delHet] => 692537
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817127
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817127/GSP_38076-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242