Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721123
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 598
[wgsID] => 375
[fwdFile] => GSP_38076_R1.fastq.gz
[fwdMd5] => fbd651e080a0f266bf379ac05cd80dc5
[revFile] => GSP_38076_R2.fastq.gz
[revMd5] => 91309f4cee4a82e1878ca8a2e1c25f7e
[rawReads] => 786221682
[FastqRCS] => 1
[enaExperiment] => ERX10632437
[enaRun] => ERR11203053
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 817
[wgsID] => 375
[refGenome] => cf4
[dateSubmitted] => 2023-06-20 10:02:00
[dateCompleted] => 2023-06-21 00:56:00
[bamMd5] => ddca61c0fa12a13242defc10aaafe700
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 796273683
[primaryReads] =>
[mappedReads] => 795628512
[primaryMapped] =>
[pairedReads] => 775658222
[meanInsertSize] => 315.99
[meanReadDepth] => 35.34
[variantsCalled] => 6604513
[variantsFiltered] => 6255971
[snpCount] => 4384464
[snpHom] => 1730184
[snpHet] => 2654280
[indelCount] => 1883065
[insHom] => 277312
[delHom] => 392852
[insHet] => 564702
[delHet] => 692537
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21817127
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817127/GSP_38076-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242