Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296812
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 638
                    [wgsID] => 15
                    [fwdFile] => HA_36624_R1.fastq.gz
                    [fwdMd5] => 765f270d9d1d884d7943a993abe43b52
                    [revFile] => HA_36624_R2.fastq.gz
                    [revMd5] => 6f24a3ad3e211cca5864d996ad33111a
                    [rawReads] => 956617138
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830383
                    [enaRun] => ERR11423075
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 34
                    [wgsID] => 15
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-12 12:17:00
                    [dateCompleted] => 2023-07-13 12:10:00
                    [bamMd5] => a4c5d3d1543d765ca17542415ce62dec
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 901683403
                    [primaryReads] => 
                    [mappedReads] => 900619370
                    [primaryMapped] => 
                    [pairedReads] => 879569030
                    [meanInsertSize] => 354.78
                    [meanReadDepth] => 44.98
                    [variantsCalled] => 6564163
                    [variantsFiltered] => 6198019
                    [snpCount] => 4345326
                    [snpHom] => 1800219
                    [snpHet] => 2545107
                    [indelCount] => 1864082
                    [insHom] => 292323
                    [delHom] => 411533
                    [insHet] => 542561
                    [delHet] => 660783
                    [genomicsDB] => cf4-toy
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659493
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659493/HA_36624-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242