Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA11296812
[wgsExptID] => 23
[Batch] => CRUKCI_1
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina DNA Prep
[PcrFree] => N
[SampleCount] => 23
[DateSubmitted] => 2021-06-11
[FastqID] => 638
[wgsID] => 15
[fwdFile] => HA_36624_R1.fastq.gz
[fwdMd5] => 765f270d9d1d884d7943a993abe43b52
[revFile] => HA_36624_R2.fastq.gz
[revMd5] => 6f24a3ad3e211cca5864d996ad33111a
[rawReads] => 956617138
[FastqRCS] => 1
[enaExperiment] => ERX10830383
[enaRun] => ERR11423075
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 34
[wgsID] => 15
[refGenome] => cf4
[dateSubmitted] => 2023-07-12 12:17:00
[dateCompleted] => 2023-07-13 12:10:00
[bamMd5] => a4c5d3d1543d765ca17542415ce62dec
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 901683403
[primaryReads] =>
[mappedReads] => 900619370
[primaryMapped] =>
[pairedReads] => 879569030
[meanInsertSize] => 354.78
[meanReadDepth] => 44.98
[variantsCalled] => 6564163
[variantsFiltered] => 6198019
[snpCount] => 4345326
[snpHom] => 1800219
[snpHet] => 2545107
[indelCount] => 1864082
[insHom] => 292323
[delHom] => 411533
[insHet] => 542561
[delHet] => 660783
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] => ERZ21659493
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659493/HA_36624-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242