Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190198
                    [wgsExptID] => 11
                    [Batch] => Edinburgh_1
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 6
                    [DateSubmitted] => 
                    [FastqID] => 476
                    [wgsID] => 124
                    [fwdFile] => IRW_18176_R1.fastq.gz
                    [fwdMd5] => af7eb189c053cdfc17184bf43a341028
                    [revFile] => IRW_18176_R2.fastq.gz
                    [revMd5] => 98f5a8be59ebaabc7896630494648f65
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10810954
                    [enaRun] => ERR11403163
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 297
                    [wgsID] => 124
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-15 11:51:00
                    [dateCompleted] => 2023-02-16 05:38:00
                    [bamMd5] => 25cb5946ee4a642c59f173553cb59f8a
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 822048269
                    [primaryReads] => 
                    [mappedReads] => 820036209
                    [primaryMapped] => 
                    [pairedReads] => 803036014
                    [meanInsertSize] => 483.27
                    [meanReadDepth] => 40.07
                    [variantsCalled] => 6283486
                    [variantsFiltered] => 5936453
                    [snpCount] => 4130791
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1815905
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21789638
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789638/IRW_18176-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242