Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190199
[wgsExptID] => 11
[Batch] => Edinburgh_1
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 6
[DateSubmitted] =>
[FastqID] => 477
[wgsID] => 125
[fwdFile] => IRW_19247_R1.fastq.gz
[fwdMd5] => 1fdd7a20c732e182a27f5a9009ca9a28
[revFile] => IRW_19247_R2.fastq.gz
[revMd5] => 02c2f314e371277f50aa8e0fe1dfbbb4
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10810955
[enaRun] => ERR11403164
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 298
[wgsID] => 125
[refGenome] => cf4
[dateSubmitted] => 2023-02-15 11:55:00
[dateCompleted] => 2023-02-16 06:12:00
[bamMd5] => fc99ed5c63246d1dbeab78a71e5f0790
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 910102978
[primaryReads] =>
[mappedReads] => 908175080
[primaryMapped] =>
[pairedReads] => 890329806
[meanInsertSize] => 463.14
[meanReadDepth] => 45.70
[variantsCalled] => 6391242
[variantsFiltered] => 6032460
[snpCount] => 4197768
[snpHom] =>
[snpHet] =>
[indelCount] => 1845938
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21789639
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789639/IRW_19247-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242