Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190201
[wgsExptID] => 11
[Batch] => Edinburgh_1
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 6
[DateSubmitted] =>
[FastqID] => 479
[wgsID] => 127
[fwdFile] => IRW_19642_R1.fastq.gz
[fwdMd5] => dbb6ee636644221d79164371b04e9abb
[revFile] => IRW_19642_R2.fastq.gz
[revMd5] => b948da2f702cc75ddba391ff0912523d
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10810957
[enaRun] => ERR11403166
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 300
[wgsID] => 127
[refGenome] => cf4
[dateSubmitted] => 2023-02-15 11:57:00
[dateCompleted] => 2023-02-15 23:13:00
[bamMd5] => 139f4e2fdbc516506002b4506bb5f5b0
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 585204578
[primaryReads] =>
[mappedReads] => 584138649
[primaryMapped] =>
[pairedReads] => 572124764
[meanInsertSize] => 472.88
[meanReadDepth] => 30.49
[variantsCalled] => 6199260
[variantsFiltered] => 5881240
[snpCount] => 4096304
[snpHom] =>
[snpHet] =>
[indelCount] => 1794453
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21789641
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789641/IRW_19642-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242