Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190190
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 196
[wgsID] => 263
[fwdFile] => IS_18850_R1.fastq.gz
[fwdMd5] => 10d7d73d5bc9252e58004c7fc518b2fd
[revFile] => IS_18850_R2.fastq.gz
[revMd5] => 427b713490a666bd9bb8516a28383b4e
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10665914
[enaRun] => ERR11257705
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 401
[wgsID] => 263
[refGenome] => cf4
[dateSubmitted] => 2023-03-30 09:39:00
[dateCompleted] => 2023-03-31 03:34:00
[bamMd5] => 27e30cc5d3389f287b34ef94fd7e5c2c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 851660943
[primaryReads] =>
[mappedReads] => 848162712
[primaryMapped] =>
[pairedReads] => 830160184
[meanInsertSize] => 454.90
[meanReadDepth] => 42.34
[variantsCalled] => 6171189
[variantsFiltered] => 5801733
[snpCount] => 4048403
[snpHom] => 2078920
[snpHet] => 1969483
[indelCount] => 1763070
[insHom] => 339017
[delHom] => 466064
[insHet] => 449075
[delHet] => 542974
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21780964
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780964/IS_18850-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242