Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190114
                    [wgsExptID] => 19
                    [Batch] => Edinburgh_9
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2018-04-26
                    [FastqID] => 197
                    [wgsID] => 77
                    [fwdFile] => IS_34583_R1.fastq.gz
                    [fwdMd5] => 648a0509a2a9c6dc85c2f8f247b02e33
                    [revFile] => IS_34583_R2.fastq.gz
                    [revMd5] => bb944f070ba2b6a7bab7b401ed53f3b3
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10648187
                    [enaRun] => ERR11223858
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 66
                    [wgsID] => 77
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-11 12:23:00
                    [dateCompleted] => 2022-10-12 05:46:00
                    [bamMd5] => c85e552681f8c91eed427343223447c3
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1006419141
                    [primaryReads] => 
                    [mappedReads] => 1002349210
                    [primaryMapped] => 
                    [pairedReads] => 980309340
                    [meanInsertSize] => 452.54
                    [meanReadDepth] => 44.59
                    [variantsCalled] => 6303183
                    [variantsFiltered] => 5931152
                    [snpCount] => 4128393
                    [snpHom] => 1974117
                    [snpHet] => 2154276
                    [indelCount] => 1813603
                    [insHom] => 312036
                    [delHom] => 434790
                    [insHet] => 498428
                    [delHet] => 606337
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21775560
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775560/IS_34583-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242