Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190114
[wgsExptID] => 19
[Batch] => Edinburgh_9
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2018-04-26
[FastqID] => 197
[wgsID] => 77
[fwdFile] => IS_34583_R1.fastq.gz
[fwdMd5] => 648a0509a2a9c6dc85c2f8f247b02e33
[revFile] => IS_34583_R2.fastq.gz
[revMd5] => bb944f070ba2b6a7bab7b401ed53f3b3
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10648187
[enaRun] => ERR11223858
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 66
[wgsID] => 77
[refGenome] => cf4
[dateSubmitted] => 2022-10-11 12:23:00
[dateCompleted] => 2022-10-12 05:46:00
[bamMd5] => c85e552681f8c91eed427343223447c3
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1006419141
[primaryReads] =>
[mappedReads] => 1002349210
[primaryMapped] =>
[pairedReads] => 980309340
[meanInsertSize] => 452.54
[meanReadDepth] => 44.59
[variantsCalled] => 6303183
[variantsFiltered] => 5931152
[snpCount] => 4128393
[snpHom] => 1974117
[snpHet] => 2154276
[indelCount] => 1813603
[insHom] => 312036
[delHom] => 434790
[insHet] => 498428
[delHet] => 606337
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21775560
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775560/IS_34583-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242